The Congress, in its application termed the governor's action as a "brazen unconstitutional" act to appoint "a junior MLA as the pro tem speaker.
Their resignations came shortly after 21 ministers of coalition partner Congress quit the cabinet.
While there are some new faces in the cabinet, leaders such as BJP president JP Nadda and Jual Oram have returned as ministers.
Siddaramaiah's dramatic gesture came when the House reassembled after two adjournments with the BJP and the JDS persisting with their demand for a discussion on the issue.
Congress MLA B C Patil also said the Bharatiya Janata Party is not involved (in footing the travel and accommodation bill).
Amid protests and anger in some quarters against observing 'Hindi Diwas', Karnataka Chief Minister Basavaraj Bommai said on Wednesday his government is bringing in a legislation to make Kannada "mandatory" in the state.
"The education minister will give reply to the issue raised by Khader, but I want to assure that the government is committed to implement the court order," Law and Parliamentary Affairs Minister J C Madhuswamy said on behalf of the government.
The Congress has 40 MLAs while the BJP has 25 in the 68-member state assembly. The remaining three seats are held by independents.
All the 13 legislators, who resigned from the Karnataka assembly membership on Tuesday, will also give up their primary membership to the Bharatiya Janatha Party.
President Ram Nath Kovind has approved the appointment of a few Governors and changes in portfolios of some others.
The 14 MLAs who had resigned earlier this month include Pratapgouda Patil, BC Patil, Shivaram Hebbar, ST Somashekhar, BA Basavaraja, Anand Singh, R Roshan Baig, Munirathna, K Sudhakar, MTB Nagaraj, AH Vishwanath, K Gopalaiah, Narayana Gowda and Shrimanth Patil.
In key organisational changes, the Congress on Wednesday appointed young face Anil Chaudhary as its Delhi unit chief and named D K Shivakumar, known to be the party's chief troubleshooter in crisis situations, as the head of the Karnataka Pradesh Congress Committee.
The bill known as the Karnataka Prevention of Slaughter and Preservation of Cattle Bill-2020 seeks a total ban on the slaughter of cows in the state and stringent punishment to those who indulge in smuggling, illegal transportation, atrocities on cows and slaughtering them, Bharatiya Janata Party sources said.
The Karnataka legislative assembly on Monday passed a unanimous resolution condemning the recent defacing of Shivaji Maharaj and Sangolli Rayanna's statues and burning of Kannada flag, and said such incidents will be considered as an act of sedition and strict action will be taken against those involved under 'Goonda Act.'
The embattled Janata Dal-Secular leader also said he was ready for everything and that he was not here to cling to power.
In true Karnataka political style, which cuts across parties and loyalties, any reinstatement of Yeddiyurappa, even with adequate legislative majority, could trigger rebellion from within, which could embarrass the Modi-Shah duo than any other development elsewhere in the country, says N Sathiya Moorthy.
A bench headed by Chief Justice Ranjan Gogoi concluded the hearings of the rebel MLAs, the Speaker and Karnataka Chief Minister H D Kumaraswamy.
Chief Minister Kumaraswamy, on private visit to the United States, said he was keeping a tab on the developments while the state Congress attacked the Bharatiya Janata Party, alleging the opposition party was trying to destabilise the government.
Several ministers of the Basavaraj Bommai-led Bharatiya Janata Party government, and the assembly speaker, lost the elections, the results of which were declared on Saturday.
Congress general secretary (communications) Jairam Ramesh said like other states, the BJP started the game of using money power, power of the government and muscle power to destabilise the Congress government in Himachal Pradesh but has failed.
The crisis in Karnataka appears to have blown over and the Bharatiya Janata Party government in the state appears to be happy that the report of Governor H R Bharadwaj endorsing President's rule has been rejected by the Centre.
Pandemonium prevailed in the Karnataka assembly on Wednesday with Minister for Rural Development and Panchayat Raj K S Eshwarappa and State Congress president D K Shivakumar charging towards each other stopping short of coming to blows.
BJP leaders said they were mulling moving the Supreme Court in the light of Thursday's developments.
Loyalists of former Karnataka chief minister B S Yeddyurappa have made another attempt to resign from the Bharatiya Janata Party unit in the state. This time, they have emailed their resignations to the Speaker of the Legislative Assembly. Fourteen BJP legislators had made an attempt to put in their papers on Wednesday but failed to do so as the Speaker was not available.
Rahul said Modi cannot speak on corruption as the party's chief ministerial candidate Yeddyurappa faced graft allegations.
Yediyurappa said he would decide on members to be inducted into the ministry after consulting party president Amit Shah.
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Hegde said NDA winning more than 400 seats in the upcoming Lok Sabha polls would eventually help in mustering a similar majority in the Rajya Sabha, and coming to power in two-third of the states.
For now, Modi's government appears singularly focussed on demonstrating that it is not in any way inhibited by the BJP's loss of a majority, and will continue along its patented path of bulldozing all opposition and doing just as it likes, asserts Prem Panicker.
The Congress top brass on Wednesday rushed former chief minister Bhupinder Singh Hooda and DK Shivakumar to Shimla to parley with members of the party which is facing loss of support and risks losing power in the state.
The prime minister prostrated before the Sengol and sought blessings from high priests of various 'adheenams' in Tamil Nadu with the holy sceptre in hand.
Chief Minister B S Yeddyurappa moved a motion seeking a vote of confidence in the legislative assembly at 1530 hours. The one line motion moved by Yeddyurappa requested the opposition to approve the motion without a debate. He requested that the vote of confidence be held immediately, but opposition Congress insisted that a debate be held before the vote of confidence takes place.
Kharge, who was popularly known as "solillada Saradara", (a leader without defeat) faced his first electoral loss in his political life spanning several decades against BJP's Umesh Jadhav in Gulbarga by a margin of 95,452 votes in the 2019 Lok Sabha polls.
Banerjee said her microphone was stopped after five minutes, while other chief ministers were allowed to speak for longer durations.
Feeling "tortured" by the Left parties' repeated "questioning" of his decisions, Lok Sabha Speaker Somnath Chatterjee on Friday threatened to step down "here and now" as a protest against "insult" to the Chair. Chatterjee said a "new culture" had emerged in the House wherein the members "go on questioning" the Speaker's ruling.
Shivakumar also said that the central observers have spoken to Sukhu, party MLAs and state unit chief Pratibha Singh and all differences have been ironed out.
Siddaramaiah represents Chamundeshwari Assembly constituency in Mysore city.
The final hearing on petitions filed by five disqualified MLAs elected as independents, challenging the Speaker's order, was adjourned till January 27 by the Karnataka High Court.
He takes over the CBI in challenging times. The perception is that the agency is reduced to being an instrument of blackmail and intimidation by successive governments.
Congress leaders KC Venugopal and Randeep Surjewala alleged Prime Minister Narendra Modi and BJP chief Amit Shah were involved in attempts to topple the JD-S-Congress government in Karnataka.